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Pp1s194_34V6


Description : glycoside hydrolase family 28 expressed


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s194_34V6
Cluster HCCA clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
At1g19170 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
MA_88519g0010 No alias (at3g62110 : 534.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Pp1s252_60V6 No alias glycoside hydrolase family 28 expressed 0.03 Orthogroups_2024-Update
Sopen09g030250 No alias Glycosyl hydrolases family 28 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 149 416
No external refs found!