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  5. Pp1s199_88V6

Pp1s199_88V6


Description : 30s ribosomal protein s9


Gene families : OG_42_0006934 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006934_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Physcomitrella release: Pp1s199_88V6
Cluster HCCA clusters: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
17067 No alias ribosomal protein S9 0.03 Orthogroups_2024-Update
A4A49_40026 No alias 30s ribosomal protein s9, chloroplastic 0.05 Orthogroups_2024-Update
AC234157.1_FG002 No alias ribosomal protein S9 0.06 Orthogroups_2024-Update
Bradi1g07370 No alias ribosomal protein S9 0.06 Orthogroups_2024-Update
Brara.G02248.1 No alias component *(uS9c) of small plastid ribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Brara.G03317.1 No alias component *(uS9c) of small plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
HORVU5Hr1G098340.3 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os03g55930 No alias ribosomal protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00020353-RA No alias (at1g74970 : 152.0) ribosomal protein S9, nuclear... 0.03 Orthogroups_2024-Update
Potri.002G132200 No alias ribosomal protein S9 0.08 Orthogroups_2024-Update
Potri.014G039600 No alias ribosomal protein S9 0.06 Orthogroups_2024-Update
Seita.9G076300.1 No alias component *(uS9c) of small plastid ribosomal-subunit proteome 0.07 Orthogroups_2024-Update
Sobic.001G076500.1 No alias component *(uS9c) of small plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Solyc04g079790 No alias 30S ribosomal protein S9 (AHRD V3.3 *** A9PB01_POPTR) 0.06 Orthogroups_2024-Update
Sopen04g033370 No alias Ribosomal protein S9/S16 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004820 glycine-tRNA ligase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006426 glycyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 106 202
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