Pp1s19_202V6

Description : ribosomal protein l27

Gene families : OG_42_0002035 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002035_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s19_202V6
Cluster	HCCA clusters: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
A4A49_35915	No alias	50s ribosomal protein l27, chloroplastic	0.05	Orthogroups_2024-Update
Bradi2g59210	No alias	ribosomal protein large subunit 27	0.08	Orthogroups_2024-Update
Cre06.g300800	No alias	ribosomal protein large subunit 27	0.06	Orthogroups_2024-Update
Glyma.04G139200	No alias	ribosomal protein large subunit 27	0.04	Orthogroups_2024-Update
Glyma.11G151300	No alias	ribosomal protein large subunit 27	0.05	Orthogroups_2024-Update
HORVU3Hr1G095330.1	No alias	component *(bL27c) of large plastid ribosomal-subunit proteome	0.08	Orthogroups_2024-Update
Kfl00287_0170	kfl00287_0170_v1.1	(p30155\|rk27_tobac : 140.0) 50S ribosomal protein L27,...	0.08	Orthogroups_2024-Update
LOC_Os01g69950	No alias	ribosomal protein L27, putative, expressed	0.03	Orthogroups_2024-Update
Mp5g06170.1	No alias	component psRPL27 of large ribosomal subunit proteome	0.04	Orthogroups_2024-Update
PSME_00008674-RA	No alias	(p30155\|rk27_tobac : 196.0) 50S ribosomal protein L27,...	0.02	Orthogroups_2024-Update
Potri.001G329500	No alias	ribosomal protein large subunit 27	0.1	Orthogroups_2024-Update
Seita.5G433600.1	No alias	component *(bL27c) of large plastid ribosomal-subunit proteome	0.02	Orthogroups_2024-Update
Sobic.003G408000.2	No alias	component *(bL27c) of large plastid ribosomal-subunit proteome	0.03	Orthogroups_2024-Update
Solyc11g068820	No alias	50S ribosomal protein L27	0.05	Orthogroups_2024-Update
Sopen11g027540	No alias	Ribosomal L27 protein	0.06	Orthogroups_2024-Update
evm.model.tig00021428.4	No alias	(at2g16930 : 106.0) Ribosomal protein L27 family...	0.02	Orthogroups_2024-Update
evm.model.tig00022075.47	No alias	(p30155\|rk27_tobac : 110.0) 50S ribosomal protein L27,...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006541	glutamine metabolic process	IEP	Predicted GO
BP	GO:0006542	glutamine biosynthetic process	IEP	Predicted GO
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Predicted GO
CC	GO:0009521	photosystem	IEP	Predicted GO
CC	GO:0009522	photosystem I	IEP	Predicted GO
CC	GO:0009523	photosystem II	IEP	Predicted GO
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Predicted GO
BP	GO:0010207	photosystem II assembly	IEP	Predicted GO
BP	GO:0015979	photosynthesis	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
MF	GO:0016211	ammonia ligase activity	IEP	Predicted GO
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predicted GO
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Predicted GO
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0019898	extrinsic component of membrane	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0034357	photosynthetic membrane	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
CC	GO:0042651	thylakoid membrane	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044436	thylakoid part	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO
CC	GO:1902494	catalytic complex	IEP	Predicted GO
CC	GO:1990204	oxidoreductase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001684	Ribosomal_L27	47	126

External Links

No external refs found!

Pp1s19_202V6

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation