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  5. Pp1s1_416V6

Pp1s1_416V6


Description : at1g03950 f21m11_12


Gene families : OG_42_0001019 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001019_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s1_416V6
Cluster HCCA clusters: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
A4A49_21866 No alias vacuolar protein sorting-associated protein 2-like 2 0.02 Orthogroups_2024-Update
Pp1s156_55V6 No alias at1g03950 f21m11_12 0.03 Orthogroups_2024-Update
Sopen02g018800 No alias Snf7 0.02 Orthogroups_2024-Update
Sopen06g003140 No alias Snf7 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
BP GO:0009653 anatomical structure morphogenesis IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0032989 cellular component morphogenesis IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0048869 cellular developmental process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR005024 Snf7_fam 2 165
No external refs found!