1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s200_118V6

Pp1s200_118V6


Description : dna binding


Gene families : OG_42_0005508 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005508_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s200_118V6
Cluster HCCA clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
At3g01460 No alias MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9] 0.03 Orthogroups_2024-Update
Pp1s282_57V6 No alias dna binding 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 1883 1928
IPR001739 Methyl_CpG_DNA-bd 589 639
IPR018501 DDT_dom 1258 1297
IPR001487 Bromodomain 1760 1811
No external refs found!