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  5. Pp1s206_50V6

Pp1s206_50V6


Description : pectate lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s206_50V6
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
A4A49_26358 No alias putative pectate lyase p18 0.02 Orthogroups_2024-Update
A4A49_31246 No alias putative pectate lyase 12 0.02 Orthogroups_2024-Update
A4A49_35525 No alias putative pectate lyase 16 0.02 Orthogroups_2024-Update
Brara.G02558.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.K01484.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Mp8g00770.1 No alias pectate lyase 0.03 Orthogroups_2024-Update
PSME_00017513-RA No alias (at4g24780 : 555.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Pp1s204_112V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Solyc09g008380 No alias Pectate lyase (AHRD V3.3 *** K4CQM6_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004357 glutamate-cysteine ligase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Predicted GO
BP GO:0006743 ubiquinone metabolic process IEP Predicted GO
BP GO:0006744 ubiquinone biosynthetic process IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
CC GO:0030014 CCR4-NOT complex IEP Predicted GO
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042181 ketone biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1901661 quinone metabolic process IEP Predicted GO
BP GO:1901663 quinone biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 209 329
No external refs found!