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  5. Pp1s208_104V6

Pp1s208_104V6


Description : K23L20.13; expressed protein [Arabidopsis thaliana]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s208_104V6
Cluster HCCA clusters: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
97289 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
99677 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.C03980.1 No alias RNA editing factor *(MEF25) 0.03 Orthogroups_2024-Update
Brara.G01483.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H01279.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre06.g298300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
HORVU3Hr1G073540.14 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G080120.11 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G080810.1 No alias RNA editing factor *(MEF10) 0.02 Orthogroups_2024-Update
HORVU5Hr1G123150.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os05g33920 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g07620 No alias pentatricopeptide, putative, expressed 0.01 Orthogroups_2024-Update
MA_68084g0010 No alias (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Seita.4G008500.1 No alias RNA editing factor *(CRR22) 0.02 Orthogroups_2024-Update
Seita.5G243300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.6G051400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G213100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G436400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G058400.1 No alias RNA editing factor *(OTP85) 0.02 Orthogroups_2024-Update
Sobic.002G403500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G187600.1 No alias processivity component *(REV7) of DNA polymerase zeta complex 0.02 Orthogroups_2024-Update
Sobic.008G147400.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G197400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc03g115800 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Sopen01g002910 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen03g002990 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g033730 No alias PPR repeat 0.02 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 725 849
IPR002885 Pentatricopeptide_repeat 222 248
IPR002885 Pentatricopeptide_repeat 324 347
IPR002885 Pentatricopeptide_repeat 692 721
IPR002885 Pentatricopeptide_repeat 626 650
IPR002885 Pentatricopeptide_repeat 350 397
IPR002885 Pentatricopeptide_repeat 451 498
IPR002885 Pentatricopeptide_repeat 551 599
IPR002885 Pentatricopeptide_repeat 252 296
No external refs found!