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Pp1s215_70V6


Description : splicing factor u2af 38 kda subunit


Gene families : OG_42_0001056 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s215_70V6
Cluster HCCA clusters: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
123490 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.06 Orthogroups_2024-Update
HORVU5Hr1G073680.3 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 153 176
IPR000571 Znf_CCCH 14 38
IPR000504 RRM_dom 86 142
No external refs found!