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  5. Pp1s215_82V6

Pp1s215_82V6


Description : ribosomal protein l12


Gene families : OG_42_0003941 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s215_82V6
Cluster HCCA clusters: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
A4A49_11444 No alias 50s ribosomal protein l12, chloroplastic 0.07 Orthogroups_2024-Update
Bradi2g45730 No alias ribosomal protein L12-C 0.11 Orthogroups_2024-Update
Brara.B03314.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Brara.F03180.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.07 Orthogroups_2024-Update
Brara.F03181.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Cre13.g581650 No alias ribosomal protein L12-A 0.12 Orthogroups_2024-Update
GRMZM2G360021 No alias ribosomal protein L12-C 0.06 Orthogroups_2024-Update
Glyma.11G099300 No alias ribosomal protein L12-A 0.05 Orthogroups_2024-Update
Glyma.12G025400 No alias ribosomal protein L12-C 0.04 Orthogroups_2024-Update
HORVU1Hr1G089760.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.14 Orthogroups_2024-Update
HORVU3Hr1G059810.2 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Kfl00181_0250 kfl00181_0250_v1.1 (q9tl30|rk12_nepol : 115.0) Chloroplast 50S ribosomal... 0.11 Orthogroups_2024-Update
LOC_Os05g49320 No alias ribosomal protein L7/L12 C-terminal domain containing... 0.04 Orthogroups_2024-Update
Mp5g15720.1 No alias component psRPL12 of large ribosomal subunit proteome 0.03 Orthogroups_2024-Update
Potri.001G346100 No alias ribosomal protein L12-A 0.09 Orthogroups_2024-Update
Seita.5G253700.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Sobic.003G246400.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.14 Orthogroups_2024-Update
Solyc02g086730 No alias 50S ribosomal protein L12, chloroplastic (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen02g031490 No alias Ribosomal protein L7/L12 C-terminal domain 0.1 Orthogroups_2024-Update
Sopen02g031500 No alias Ribosomal protein L7/L12 C-terminal domain 0.13 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR013823 Ribosomal_L7/L12_C 147 214
IPR008932 Ribosomal_L7/L12_oligo 88 135
No external refs found!