Solyc11g039890

Description : Nuclear pore complex protein Nup188a (AHRD V3.3 *-* W6JJC0_NICBE)

Gene families : OG_42_0005547 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005547_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc11g039890
Cluster	HCCA clusters: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method	Actions
MA_10433306g0010	No alias	(at4g38760 : 96.7) Protein of unknown function...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Predicted GO
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Predicted GO
BP	GO:0008037	cell recognition	IEP	Predicted GO
BP	GO:0016052	carbohydrate catabolic process	IEP	Predicted GO
MF	GO:0016160	amylase activity	IEP	Predicted GO
MF	GO:0016161	beta-amylase activity	IEP	Predicted GO
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Predicted GO
BP	GO:0022414	reproductive process	IEP	Predicted GO
BP	GO:0048544	recognition of pollen	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR021827	Nup186/Nup192/Nup205	26	162

External Links

No external refs found!