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  5. Pp1s252_28V6

Pp1s252_28V6


Description : chlorophyll a-b binding protein of lhcii


Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s252_28V6
Cluster HCCA clusters: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
270427 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.04 Orthogroups_2024-Update
407444 No alias light-harvesting chlorophyll B-binding protein 3 0.03 Orthogroups_2024-Update
444370 No alias light harvesting complex of photosystem II 5 0.02 Orthogroups_2024-Update
446130 No alias photosystem I light harvesting complex gene 2 0.04 Orthogroups_2024-Update
A4A49_03871 No alias chlorophyll a-b binding protein 36, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_33198 No alias chlorophyll a-b binding protein p4, chloroplastic 0.03 Orthogroups_2024-Update
AC207722.2_FG009 No alias photosystem II light harvesting complex gene B1B2 0.02 Orthogroups_2024-Update
At1g29910 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.03 Orthogroups_2024-Update
At1g45474 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.02 Orthogroups_2024-Update
At2g05070 No alias Chlorophyll a-b binding protein 2.2, chloroplastic... 0.03 Orthogroups_2024-Update
At2g34430 No alias Chlorophyll a-b binding protein, chloroplastic... 0.03 Orthogroups_2024-Update
At3g27690 No alias Chlorophyll a-b binding protein, chloroplastic... 0.04 Orthogroups_2024-Update
At3g47470 No alias Chlorophyll a-b binding protein, chloroplastic... 0.03 Orthogroups_2024-Update
At4g10340 No alias Chlorophyll a-b binding protein, chloroplastic... 0.03 Orthogroups_2024-Update
At5g54270 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.03 Orthogroups_2024-Update
Bradi4g21170 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
Bradi4g27480 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
Bradi4g30060 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.02 Orthogroups_2024-Update
Brara.B03307.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.C01741.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.C02638.1 No alias component *(LHCb5) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.C04035.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.D02090.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.E00980.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E00981.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.F03187.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.G01647.1 No alias component *(LHCa1) of LHC-I complex 0.02 Orthogroups_2024-Update
Brara.I00297.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.K00763.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre03.g156900 No alias photosystem II light harvesting complex gene 2.2 0.01 Orthogroups_2024-Update
Cre04.g232104 No alias photosystem II light harvesting complex gene 2.1 0.01 Orthogroups_2024-Update
Cre06.g272650 No alias photosystem I light harvesting complex gene 5 0.03 Orthogroups_2024-Update
Cre06.g278213 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.03 Orthogroups_2024-Update
Cre06.g283950 No alias photosystem II light harvesting complex gene 2.1 0.01 Orthogroups_2024-Update
Cre06.g285250 No alias photosystem II light harvesting complex gene 2.1 0.01 Orthogroups_2024-Update
Cre07.g344950 No alias photosystem I light harvesting complex gene 5 0.03 Orthogroups_2024-Update
Cre10.g425900 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.03 Orthogroups_2024-Update
Cre10.g452050 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.03 Orthogroups_2024-Update
Cre10.g454734 No alias photosystem I light harvesting complex gene 3 0.02 Orthogroups_2024-Update
Cre12.g508750 No alias photosystem I light harvesting complex gene 6 0.03 Orthogroups_2024-Update
Cre12.g548400 No alias photosystem II light harvesting complex gene 2.2 0.01 Orthogroups_2024-Update
Cre16.g673650 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
GRMZM2G057281 No alias light-harvesting chlorophyll B-binding protein 3 0.02 Orthogroups_2024-Update
GRMZM2G072280 No alias photosystem I light harvesting complex gene 2 0.04 Orthogroups_2024-Update
GRMZM2G160268 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.02 Orthogroups_2024-Update
Glyma.02G064700 No alias photosystem I light harvesting complex gene 1 0.03 Orthogroups_2024-Update
Glyma.02G305400 No alias photosystem II light harvesting complex gene 2.1 0.04 Orthogroups_2024-Update
Glyma.04G167900 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.03 Orthogroups_2024-Update
Glyma.06G194900 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.04 Orthogroups_2024-Update
Glyma.10G177200 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
Glyma.13G282000 No alias light-harvesting chlorophyll B-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.14G008000 No alias photosystem II light harvesting complex gene 2.1 0.04 Orthogroups_2024-Update
Glyma.16G016100 No alias photosystem I light harvesting complex gene 2 0.04 Orthogroups_2024-Update
Glyma.16G145800 No alias photosystem I light harvesting complex gene 1 0.03 Orthogroups_2024-Update
Glyma.16G205200 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
Glyma.17G262400 No alias Chlorophyll A-B binding family protein 0.02 Orthogroups_2024-Update
Glyma.20G212900 No alias light harvesting complex of photosystem II 5 0.04 Orthogroups_2024-Update
HORVU1Hr1G088870.2 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
HORVU1Hr1G089180.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Kfl00009_0500 kfl00009_0500_v1.... (p13869|cb12_pethy : 139.0) Chlorophyll a-b binding... 0.05 Orthogroups_2024-Update
Kfl00009_0510 kfl00009_0510_v1.1 (at3g54890 : 130.0) Encodes a component of the light... 0.05 Orthogroups_2024-Update
LOC_Os01g41710 No alias chlorophyll A-B binding protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g52240 No alias chlorophyll A-B binding protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os02g52650 No alias chlorophyll A-B binding protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os07g37550 No alias chlorophyll A-B binding protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os08g33820 No alias chlorophyll A-B binding protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g12540 No alias chlorophyll A-B binding protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g13890 No alias chlorophyll A-B binding protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10431493g0010 No alias (at3g54890 : 355.0) Encodes a component of the light... 0.04 Orthogroups_2024-Update
MA_176279g0010 No alias (at4g10340 : 387.0) photosystem II encoding the... 0.05 Orthogroups_2024-Update
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g05890.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g05980.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06720.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g06730.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g06750.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp8g12010.1 No alias component LHCq of LHC-II complex 0.03 Orthogroups_2024-Update
PSME_00020247-RA No alias (at3g47470 : 395.0) Encodes a chlorophyll a/b-binding... 0.02 Orthogroups_2024-Update
PSME_00045363-RA No alias (at3g54890 : 352.0) Encodes a component of the light... 0.02 Orthogroups_2024-Update
PSME_00054524-RA No alias (p10049|cb21_pinth : 468.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
PSME_00056454-RA No alias (p15194|cb2b_pinsy : 543.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
Potri.003G020400 No alias light harvesting complex photosystem II subunit 6 0.02 Orthogroups_2024-Update
Seita.4G139900.1 No alias component *(LHCa1) of LHC-I complex 0.02 Orthogroups_2024-Update
Sobic.001G177000.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.002G352100.1 No alias component *(LHCa2) of LHC-I complex 0.04 Orthogroups_2024-Update
Sobic.004G056900.1 No alias component *(LHCa1) of LHC-I complex 0.04 Orthogroups_2024-Update
Sobic.005G087000.1 No alias component *(LHCb5) of LHC-II complex 0.05 Orthogroups_2024-Update
Solyc02g070950 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.02 Orthogroups_2024-Update
Solyc03g005770 No alias chlorophyll a/b-binding protein 0.02 Orthogroups_2024-Update
Solyc03g005780 No alias chlorophyll a/b-binding protein Cab-3C 0.02 Orthogroups_2024-Update
Solyc03g115900 No alias chlorophyll a-b binding protein CAB11 0.02 Orthogroups_2024-Update
Solyc04g082920 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.02 Orthogroups_2024-Update
Solyc07g047850 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.02 Orthogroups_2024-Update
Solyc07g063600 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.02 Orthogroups_2024-Update
Solyc08g067320 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.02 Orthogroups_2024-Update
Solyc08g067330 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.02 Orthogroups_2024-Update
Solyc12g009200 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.02 Orthogroups_2024-Update
Sopen02g019860 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen02g020050 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen02g020060 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen02g020070 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen02g020080 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen02g020090 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen03g001810 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen05g034460 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen06g022840 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen07g031780 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen08g021280 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen12g004150 No alias Chlorophyll A-B binding protein 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 129 292
No external refs found!