1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s252_60V6

Pp1s252_60V6


Description : glycoside hydrolase family 28 expressed


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s252_60V6
Cluster HCCA clusters: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G154671 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G348602 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G062220.2 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
HORVU7Hr1G002110.5 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
LOC_Os08g01600 No alias polygalacturonase, putative, expressed 0.01 Orthogroups_2024-Update
PSME_00027467-RA No alias (at3g61490 : 556.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Pp1s194_34V6 No alias glycoside hydrolase family 28 expressed 0.03 Orthogroups_2024-Update
Seita.1G013800.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Seita.9G022500.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sobic.009G250800.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Solyc06g009790 No alias Pectin lyase-like superfamily protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 179 458
No external refs found!