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Pp1s257_72V6


Description : contains EST(s): AU197250(E2058),AU075435(E60706),D46065(S10469),AU031063 (E60706),AU068255(C12673) [Oryza sativa (japonica cultivar-group)]


Gene families : OG_42_0000711 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s257_72V6
Cluster HCCA clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
At1g49760 No alias Polyadenylate-binding protein 8... 0.02 Orthogroups_2024-Update
Brara.B01968.1 No alias mRNA poly-A-tail binding factor *(PABP) 0.04 Orthogroups_2024-Update
Brara.F00361.1 No alias mRNA poly-A-tail binding factor *(PABP) 0.03 Orthogroups_2024-Update
MA_18005g0010 No alias (at4g34110 : 447.0) Putative poly-A binding protein.... 0.02 Orthogroups_2024-Update
PSME_00028723-RA No alias (at1g49760 : 653.0) polyadenylate-binding protein,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0010564 regulation of cell cycle process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032465 regulation of cytokinesis IEP Predicted GO
BP GO:0032954 regulation of cytokinetic process IEP Predicted GO
BP GO:0032955 regulation of division septum assembly IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044087 regulation of cellular component biogenesis IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
BP GO:0051302 regulation of cell division IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:1901891 regulation of cell septum assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 312 380
IPR000504 RRM_dom 209 277
IPR000504 RRM_dom 30 100
IPR000504 RRM_dom 118 185
IPR002004 PABP_HYD 561 627
No external refs found!