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  5. Solyc01g008050

Solyc01g008050


Description : Trichome birefringence-like 27 (AHRD V3.3 *** A0A061E629_THECC)


Gene families : OG_42_0000195 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000195_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g008050
Cluster HCCA clusters: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
A4A49_40186 No alias protein trichome birefringence-like 25 0.05 Orthogroups_2024-Update
Brara.I00067.1 No alias mannan O-acetyltransferase *(MOAT) 0.02 Orthogroups_2024-Update
GRMZM2G004183 No alias TRICHOME BIREFRINGENCE-LIKE 19 0.03 Orthogroups_2024-Update
Glyma.13G230100 No alias TRICHOME BIREFRINGENCE-LIKE 21 0.02 Orthogroups_2024-Update
Pp1s326_28V6 No alias F6F3.23; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR025846 PMR5_N_dom 64 114
IPR026057 PC-Esterase 115 406
No external refs found!