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  5. Solyc01g099000

Solyc01g099000


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0B2P3V1_GLYSO)


Gene families : OG_42_0009605 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009605_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g099000
Cluster HCCA clusters: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
Bradi2g36120 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G021100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Seita.3G039300.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006282 regulation of DNA repair IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
BP GO:0080135 regulation of cellular response to stress IEP Predicted GO
BP GO:2001020 regulation of response to DNA damage stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 394 418
IPR002885 Pentatricopeptide_repeat 118 146
IPR002885 Pentatricopeptide_repeat 293 313
IPR002885 Pentatricopeptide_repeat 87 113
IPR002885 Pentatricopeptide_repeat 192 218
IPR002885 Pentatricopeptide_repeat 220 246
IPR002885 Pentatricopeptide_repeat 323 351
IPR002885 Pentatricopeptide_repeat 420 467
IPR032867 DYW_dom 594 653
No external refs found!