Description : c-type u1 snrnp
Gene families : OG_42_0003956 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003956_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Physcomitrella release: Pp1s267_86V6 | |
Cluster | HCCA clusters: Cluster_289 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Glyma.10G021900 | No alias | C2H2 and C2HC zinc fingers superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.003G058400 | No alias | C2H2 and C2HC zinc fingers superfamily protein | 0.02 | Orthogroups_2024-Update | |
Pp1s155_106V6 | No alias | c-type u1 snrnp | 0.05 | Orthogroups_2024-Update | |
Sopen01g029780 | No alias | U1 zinc finger | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
MF | GO:0005509 | calcium ion binding | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006952 | defense response | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR013085 | U1-CZ_Znf_C2H2 | 1 | 38 |
No external refs found! |