Pp1s268_11V6

Description : deah (asp-glu-ala-his) box polypeptide 35

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s268_11V6
Cluster	HCCA clusters: Cluster_294

Target	Alias	Description	ECC score	Gene Family Method
Cre07.g329150	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Glyma.14G217400	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
HORVU7Hr1G107830.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Kfl00133_0140	kfl00133_0140_v1.1	(at3g62310 : 1153.0) RNA helicase family protein;...	0.02	Orthogroups_2024-Update
Mp1g21130.1	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.02	Orthogroups_2024-Update
PSME_00053286-RA	No alias	(at1g32490 : 593.0) Encodes a homolog of the yeast PRP2...	0.02	Orthogroups_2024-Update
Potri.010G172500	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Solyc03g115390	No alias	RNA helicase DEAH-box10	0.03	Orthogroups_2024-Update
Solyc10g076910	No alias	ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9SMB4_RICCO)	0.02	Orthogroups_2024-Update
evm.model.contig_524.2	No alias	(at3g62310 : 724.0) RNA helicase family protein;...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0004650	polygalacturonase activity	IEP	Predicted GO
MF	GO:0005096	GTPase activator activity	IEP	Predicted GO
MF	GO:0008047	enzyme activator activity	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
MF	GO:0016866	intramolecular transferase activity	IEP	Predicted GO
MF	GO:0030695	GTPase regulator activity	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	58	206
IPR007502	Helicase-assoc_dom	453	528
IPR001650	Helicase_C	269	390
IPR011709	DUF1605	602	678

External Links

No external refs found!