1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s275_13V6

Pp1s275_13V6


Description : histone h3


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s275_13V6
Cluster HCCA clusters: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
A4A49_57080 No alias histone h3.2 0.02 Orthogroups_2024-Update
Cre06.g264650 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g265250 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g267950 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g274850 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g276600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276850 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504650 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504800 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g506300 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g506500 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre16.g661450 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre17.g708150 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g708700 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g709050 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G188600 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Kfl00240_g18 kfl00240_g18_v1.1 (at5g10980 : 254.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
Mp3g07730.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
Solyc05g051500 No alias WEB family protein, chloroplastic (AHRD V3.3 *-*... 0.02 Orthogroups_2024-Update
Sopen01g033790 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen10g004700 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004451 isocitrate lyase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016833 oxo-acid-lyase activity IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
CC GO:0071821 FANCM-MHF complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 129
No external refs found!