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  5. Pp1s282_57V6

Pp1s282_57V6


Description : dna binding


Gene families : OG_42_0005508 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005508_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s282_57V6
Cluster HCCA clusters: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Brara.A03939.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.13G170000 No alias methyl-CPG-binding domain 9 0.04 Orthogroups_2024-Update
Glyma.19G010200 No alias methyl-CPG-binding domain 9 0.04 Orthogroups_2024-Update
LOC_Os02g09920 No alias PHD-finger domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Pp1s200_118V6 No alias dna binding 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006906 vesicle fusion IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0016050 vesicle organization IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Predicted GO
BP GO:0048284 organelle fusion IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0061025 membrane fusion IEP Predicted GO
BP GO:0090174 organelle membrane fusion IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR028941 WHIM2_dom 1665 1776
IPR018501 DDT_dom 509 548
IPR019787 Znf_PHD-finger 229 277
IPR019787 Znf_PHD-finger 1120 1165
IPR028942 WHIM1_dom 1216 1255
No external refs found!