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Pp1s28_193V6


Description : pre-mrna-splicing factor sf2


Gene families : OG_42_0001203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001203_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s28_193V6
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
At3g49430 No alias Serine/arginine-rich splicing factor SR34A... 0.03 Orthogroups_2024-Update
Bradi2g11990 No alias SERINE-ARGININE PROTEIN 30 0.02 Orthogroups_2024-Update
Brara.B02609.1 No alias RNA splicing factor *(SR30/34) 0.02 Orthogroups_2024-Update
MA_141465g0010 No alias (at1g02840 : 277.0) SR1 is a plant homologue of the... 0.02 Orthogroups_2024-Update
MA_40046g0020 No alias (at1g02840 : 246.0) SR1 is a plant homologue of the... 0.03 Orthogroups_2024-Update
PSME_00014886-RA No alias (at1g02840 : 253.0) SR1 is a plant homologue of the... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 125 188
IPR000504 RRM_dom 9 76
No external refs found!