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  5. Pp1s28_315V6

Pp1s28_315V6


Description : chloroplast light-harvesting complex ii protein


Gene families : OG_42_0005004 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s28_315V6
Cluster HCCA clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
271833 No alias light harvesting complex photosystem II subunit 6 0.03 Orthogroups_2024-Update
A4A49_19796 No alias chlorophyll a-b binding protein cp24 10a, chloroplastic 0.07 Orthogroups_2024-Update
At1g15820 No alias Chlorophyll a-b binding protein, chloroplastic... 0.1 Orthogroups_2024-Update
Bradi5g12150 No alias light harvesting complex photosystem II subunit 6 0.16 Orthogroups_2024-Update
Brara.F01095.1 No alias component *(LHCb6) of LHC-II complex 0.12 Orthogroups_2024-Update
Brara.H02525.1 No alias component *(LHCb6) of LHC-II complex 0.05 Orthogroups_2024-Update
Brara.I04910.1 No alias component *(LHCb6) of LHC-II complex 0.03 Orthogroups_2024-Update
GRMZM2G088983 No alias light harvesting complex photosystem II subunit 6 0.04 Orthogroups_2024-Update
GRMZM2G092427 No alias light harvesting complex photosystem II subunit 6 0.05 Orthogroups_2024-Update
Glyma.08G074000 No alias light harvesting complex photosystem II subunit 6 0.1 Orthogroups_2024-Update
Glyma.08G180000 No alias light harvesting complex photosystem II subunit 6 0.12 Orthogroups_2024-Update
Glyma.15G052400 No alias light harvesting complex photosystem II subunit 6 0.11 Orthogroups_2024-Update
HORVU2Hr1G079920.4 No alias component *(LHCb6) of LHC-II complex 0.07 Orthogroups_2024-Update
Kfl00276_0010 kfl00276_0010_v1.1 (at1g15820 : 338.0) Lhcb6 protein (Lhcb6), light... 0.05 Orthogroups_2024-Update
LOC_Os04g38410 No alias chlorophyll A-B binding protein, putative, expressed 0.08 Orthogroups_2024-Update
Potri.001G210000 No alias light harvesting complex photosystem II subunit 6 0.03 Orthogroups_2024-Update
Seita.7G121800.1 No alias component *(LHCb6) of LHC-II complex 0.15 Orthogroups_2024-Update
Sobic.006G264201.1 No alias component *(LHCb6) of LHC-II complex 0.07 Orthogroups_2024-Update
Solyc01g105030 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.12 Orthogroups_2024-Update
Solyc01g105050 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.12 Orthogroups_2024-Update
Sopen01g047560 No alias Chlorophyll A-B binding protein 0.09 Orthogroups_2024-Update
Sopen01g047580 No alias Chlorophyll A-B binding protein 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
CC GO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 76 252
No external refs found!