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  5. Pp1s293_80V6

Pp1s293_80V6


Description : T10D10.21; pumilio/Puf RNA-binding domain-containing protein [Arabidopsis thaliana]


Gene families : OG_42_0007710 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007710_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s293_80V6
Cluster HCCA clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Brara.G03119.1 No alias rRNA biogenesis auxiliary factor *(APUM23) 0.03 Orthogroups_2024-Update
Cre16.g649600 No alias pumilio 23 0.09 Orthogroups_2024-Update
Glyma.03G263200 No alias pumilio 23 0.07 Orthogroups_2024-Update
HORVU6Hr1G013720.4 No alias rRNA biogenesis auxiliary factor *(APUM23) 0.04 Orthogroups_2024-Update
Kfl00115_0200 kfl00115_0200_v1.1 (at1g72320 : 276.0) Encodes a member of the Arabidopsis... 0.02 Orthogroups_2024-Update
Potri.003G073000 No alias pumilio 23 0.02 Orthogroups_2024-Update
Seita.1G320000.1 No alias rRNA biogenesis auxiliary factor *(APUM23) 0.02 Orthogroups_2024-Update
evm.model.tig00021234.17 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!