Pp1s29_222V6


Description : 40s ribosomal protein


Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s29_222V6
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
270414 No alias Ribosomal protein S3 family protein 0.05 Orthogroups_2024-Update
A4A49_00336 No alias 40s ribosomal protein s3-3 0.15 Orthogroups_2024-Update
At2g31610 No alias 40S ribosomal protein S3-1... 0.05 Orthogroups_2024-Update
At5g35530 No alias 40S ribosomal protein S3-3... 0.05 Orthogroups_2024-Update
Bradi1g21730 No alias Ribosomal protein S3 family protein 0.02 Orthogroups_2024-Update
Bradi3g16150 No alias Ribosomal protein S3 family protein 0.11 Orthogroups_2024-Update
Brara.C01612.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Brara.C01619.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.33 Orthogroups_2024-Update
Brara.D01897.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Brara.D01899.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Cre02.g102250 No alias Ribosomal protein S3 family protein 0.08 Orthogroups_2024-Update
GRMZM2G074300 No alias Ribosomal protein S3 family protein 0.07 Orthogroups_2024-Update
Glyma.09G156600 No alias Ribosomal protein S3 family protein 0.07 Orthogroups_2024-Update
Glyma.10G133100 No alias Ribosomal protein S3 family protein 0.1 Orthogroups_2024-Update
Glyma.10G133800 No alias Ribosomal protein S3 family protein 0.05 Orthogroups_2024-Update
Glyma.16G207300 No alias Ribosomal protein S3 family protein 0.04 Orthogroups_2024-Update
Glyma.16G207400 No alias Ribosomal protein S3 family protein 0.08 Orthogroups_2024-Update
Glyma.20G083300 No alias Ribosomal protein S3 family protein 0.12 Orthogroups_2024-Update
Kfl00057_0410 kfl00057_0410_v1.1 (at5g35530 : 390.0) Ribosomal protein S3 family protein;... 0.05 Orthogroups_2024-Update
MA_10436283g0010 No alias (at5g35530 : 397.0) Ribosomal protein S3 family protein;... 0.06 Orthogroups_2024-Update
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.18 Orthogroups_2024-Update
PSME_00007401-RA No alias (at5g35530 : 366.0) Ribosomal protein S3 family protein;... 0.11 Orthogroups_2024-Update
PSME_00040312-RA No alias (at5g35530 : 390.0) Ribosomal protein S3 family protein;... 0.11 Orthogroups_2024-Update
Potri.006G222100 No alias Ribosomal protein S3 family protein 0.15 Orthogroups_2024-Update
Potri.018G049100 No alias Ribosomal protein S3 family protein 0.07 Orthogroups_2024-Update
Pp1s136_175V6 No alias 40s ribosomal protein 0.08 Orthogroups_2024-Update
Seita.2G385700.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Seita.6G050300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Sobic.002G371100.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Sobic.007G053300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.3 Orthogroups_2024-Update
Solyc07g041310 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.24 Orthogroups_2024-Update
Solyc08g061850 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.21 Orthogroups_2024-Update
Solyc08g061960 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.25 Orthogroups_2024-Update
Sopen07g020630 No alias Ribosomal protein S3, C-terminal domain 0.36 Orthogroups_2024-Update
Sopen08g017410 No alias Ribosomal protein S3, C-terminal domain 0.14 Orthogroups_2024-Update
Sopen08g017480 No alias Ribosomal protein S3, C-terminal domain 0.22 Orthogroups_2024-Update
evm.model.contig_2149.7 No alias (at5g35530 : 302.0) Ribosomal protein S3 family protein;... 0.36 Orthogroups_2024-Update
evm.model.tig00021462.41 No alias (at2g31610 : 358.0) Ribosomal protein S3 family protein;... 0.22 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 20 93
IPR001351 Ribosomal_S3_C 106 188
No external refs found!