1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g065360

Solyc11g065360


Description : ABC transporter G family member (AHRD V3.3 *** A0A0K9PC58_ZOSMR)


Gene families : OG_42_0000390 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g065360
Cluster HCCA clusters: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
At1g51460 No alias ABC transporter G family member 13... 0.03 Orthogroups_2024-Update
At3g21090 No alias ABC transporter G family member 15... 0.03 Orthogroups_2024-Update
GRMZM2G177812 No alias white-brown complex homolog protein 11 0.02 Orthogroups_2024-Update
GRMZM2G308860 No alias white-brown complex homolog protein 11 0.03 Orthogroups_2024-Update
Glyma.16G209400 No alias white-brown complex homolog protein 11 0.03 Orthogroups_2024-Update
HORVU1Hr1G061710.4 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
HORVU2Hr1G090960.2 No alias suberin/cutin lipid exporter *(DSO) & subfamily ABCG transporter 0.02 Orthogroups_2024-Update
LOC_Os12g22284 No alias white-brown complex homolog protein 11, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00005988-RA No alias (at1g17840 : 836.0) Encodes a plasma membrane-localized... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 46 197
IPR013525 ABC_2_trans 363 572
No external refs found!