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  5. Pp1s306_41V6

Pp1s306_41V6


Description : F3A4.70; expressed protein [Arabidopsis thaliana]


Gene families : OG_42_0004945 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s306_41V6
Cluster HCCA clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
A4A49_13360 No alias hypothetical protein 0.08 Orthogroups_2024-Update
Cre02.g146000 No alias Function unknown 0.04 Orthogroups_2024-Update
Kfl00006_0390 kfl00006_0390_v1.1 no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
LOC_Os03g25620 No alias LTV1, putative, expressed 0.03 Orthogroups_2024-Update
Seita.2G403600.1 No alias pre-40S ribosomal-subunit proteome nuclear export factor *(Ltv1) 0.02 Orthogroups_2024-Update
Seita.9G390500.1 No alias pre-40S ribosomal-subunit proteome nuclear export factor *(Ltv1) 0.06 Orthogroups_2024-Update
Sobic.001G358600.3 No alias pre-40S ribosomal-subunit proteome nuclear export factor *(Ltv1) 0.04 Orthogroups_2024-Update
Solyc04g081030 No alias LTV1, putative (AHRD V3.3 *** A0A061ENH3_THECC) 0.04 Orthogroups_2024-Update
Sopen04g034650 No alias hypothetical protein 0.04 Orthogroups_2024-Update
evm.model.contig_4426.3 No alias (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Predicted GO
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Predicted GO
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007307 LTV 300 535
IPR007307 LTV 8 285
No external refs found!