1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g065990

Solyc11g065990


Description : Actin (AHRD V3.3 *** ACT_GOSHI)


Gene families : OG_42_0000262 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000262_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g065990
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
At5g09810 No alias AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4] 0.02 Orthogroups_2024-Update
GRMZM2G047055 No alias actin-11 0.02 Orthogroups_2024-Update
LOC_Os03g50885 No alias actin, putative, expressed 0.03 Orthogroups_2024-Update
MA_10430339g0010 No alias (o81221|act_goshi : 618.0) Actin - Gossypium hirsutum... 0.03 Orthogroups_2024-Update
Sobic.001G197400.1 No alias actin filament protein 0.05 Orthogroups_2024-Update
Sobic.009G006100.1 No alias actin filament protein 0.03 Orthogroups_2024-Update
evm.model.tig00000319.25 No alias (p17300|act7_orysa : 472.0) Actin-7 - Oryza sativa... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004000 Actin 5 377
No external refs found!