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  5. Pp1s30_190V6

Pp1s30_190V6


Description : F21M11.23; hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]


Gene families : OG_42_0002928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s30_190V6
Cluster HCCA clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
A4A49_26693 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Bradi3g35037 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.F03623.1 No alias pre-mRNA-processing protein *(PRP39) 0.03 Orthogroups_2024-Update
Cre16.g670300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G487629 No alias Function unknown 0.02 Orthogroups_2024-Update
MA_6626g0010 No alias (at1g04080 : 605.0) PRP39; INVOLVED IN: regulation of... 0.02 Orthogroups_2024-Update
Pp1s59_249V6 No alias pre-mrna-processing protein 0.03 Orthogroups_2024-Update
Seita.9G495800.1 No alias pre-mRNA-processing protein *(PRP39) 0.02 Orthogroups_2024-Update
Sobic.007G116200.1 No alias pre-mRNA-processing protein *(PRP39) 0.03 Orthogroups_2024-Update
Solyc09g064590 No alias Pre-mRNA-processing factor 39 (AHRD V3.3 *** A0A0B2P4C7_GLYSO) 0.02 Orthogroups_2024-Update
evm.model.tig00020911.47 No alias (at1g04080 : 141.0) PRP39; INVOLVED IN: regulation of... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!