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  5. Pp1s31_251V6

Pp1s31_251V6


Description : rna binding


Gene families : OG_42_0002935 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s31_251V6

Target Alias Description ECC score Gene Family Method Actions
101113 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.03 Orthogroups_2024-Update
Glyma.02G298000 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.01 Orthogroups_2024-Update
Glyma.14G015700 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.02 Orthogroups_2024-Update
MA_10433202g0020 No alias (at2g05160 : 233.0) CCCH-type zinc fingerfamily protein... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 364 414
IPR000571 Znf_CCCH 195 216
IPR025605 OST-HTH/LOTUS_dom 243 319
No external refs found!