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  5. Solyc11g066840

Solyc11g066840


Description : Histone deacetylase-like protein-like (AHRD V3.3 *** Q2XTD2_SOLTU)


Gene families : OG_42_0001839 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g066840
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
428242 No alias histone deacetylase 2B 0.08 Orthogroups_2024-Update
A4A49_64689 No alias histone deacetylase hdt1 0.04 Orthogroups_2024-Update
At2g27840 No alias Histone deacetylase HDT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4T3] 0.09 Orthogroups_2024-Update
Bradi2g14120 No alias histone deacetylase 2B 0.08 Orthogroups_2024-Update
Brara.B00987.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.05 Orthogroups_2024-Update
Brara.D01665.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.08 Orthogroups_2024-Update
Brara.J01458.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.09 Orthogroups_2024-Update
Brara.J02801.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.03 Orthogroups_2024-Update
GRMZM2G100146 No alias histone deacetylase 3 0.07 Orthogroups_2024-Update
Glyma.12G181400 No alias histone deacetylase 2C 0.07 Orthogroups_2024-Update
HORVU1Hr1G095140.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.03 Orthogroups_2024-Update
Kfl00300_0030 kfl00300_0030_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
MA_601245g0010 No alias (original description: no original description) 0.03 Orthogroups_2024-Update
Pp1s7_389V6 No alias histone deacetylase 0.02 Orthogroups_2024-Update
Seita.3G117500.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.08 Orthogroups_2024-Update
Seita.5G422200.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.04 Orthogroups_2024-Update
Sobic.009G211700.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.11 Orthogroups_2024-Update
evm.model.tig00000388.65 No alias (at4g25340 : 88.6) Encodes a member of the FKBP-type... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!