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  5. Pp1s327_24V6

Pp1s327_24V6


Description : rna binding


Gene families : OG_42_0001272 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001272_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s327_24V6
Cluster HCCA clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
At2g44710 No alias At2g44720/F16B22.21 [Source:UniProtKB/TrEMBL;Acc:Q8RWQ1] 0.03 Orthogroups_2024-Update
Glyma.02G049800 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.16G130000 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
Kfl00315_0080 kfl00315_0080_v1.1 (at2g44710 : 182.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
PSME_00006978-RA No alias (at2g44710 : 377.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
Potri.002G139700 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 379 448
IPR000504 RRM_dom 461 523
IPR000504 RRM_dom 556 620
No external refs found!