1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s32_290V6

Pp1s32_290V6


Description : dna-directed rna polymerases ii 24 kda polypeptide


Gene families : OG_42_0003283 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003283_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s32_290V6
Cluster HCCA clusters: Cluster_295

Target Alias Description ECC score Gene Family Method Actions
PSME_00023104-RA No alias (at3g22320 : 283.0) Non-catalytic subunit common to... 0.02 Orthogroups_2024-Update
Seita.7G144900.1 No alias component *(NRPC5) of RNA polymerase III complex &... 0.03 Orthogroups_2024-Update
Solyc05g051790 No alias DNA-directed RNA polymerase II (AHRD V3.3 *** G7K102_MEDTR) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP Predicted GO
BP GO:0000469 cleavage involved in rRNA processing IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Predicted GO
MF GO:0036442 proton-exporting ATPase activity IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR005571 RNA_pol_Rpb5_N 8 92
IPR000783 RNA_pol_subH/Rpb5_C 135 207
No external refs found!