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  5. Pp1s336_70V6

Pp1s336_70V6


Description : contains ESTs AU057056(S21102),C72451(E1640) similar to shock protein SRC2 unknown protein [Oryza sativa (japonica cultivar-group)]


Gene families : OG_42_0000703 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000703_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s336_70V6
Cluster HCCA clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
A4A49_05338 No alias hypothetical protein 0.03 Orthogroups_2024-Update
A4A49_32216 No alias protein src2 0.02 Orthogroups_2024-Update
Bradi1g18260 No alias soybean gene regulated by cold-2 0.02 Orthogroups_2024-Update
Bradi2g13000 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.02 Orthogroups_2024-Update
Kfl00133_0060 kfl00133_0060_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Pp1s369_19V6 No alias src2-like protein 0.02 Orthogroups_2024-Update
Pp1s75_103V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.5G442200.1 No alias ER-anchored membrane contact site protein *(SRC2) 0.02 Orthogroups_2024-Update
Sobic.003G416500.1 No alias ER-anchored membrane contact site protein *(SRC2) 0.03 Orthogroups_2024-Update
Solyc11g013250 No alias LOW QUALITY:Calcium-dependent lipid-binding... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000008 C2_dom 6 105
No external refs found!