Pp1s338_12V6


Description : multidrug pheromone mdr abc transporter family


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s338_12V6
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
169182 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
A4A49_02254 No alias abc transporter b family member 11 0.02 Orthogroups_2024-Update
A4A49_07249 No alias abc transporter b family member 19 0.03 Orthogroups_2024-Update
A4A49_25017 No alias abc transporter b family member 9 0.04 Orthogroups_2024-Update
At1g28010 No alias ABC transporter B family member 14... 0.03 Orthogroups_2024-Update
At3g62150 No alias ABC transporter B family member 21... 0.02 Orthogroups_2024-Update
At4g25960 No alias ABC transporter B family member 2... 0.03 Orthogroups_2024-Update
Bradi1g66290 No alias P-glycoprotein 20 0.03 Orthogroups_2024-Update
Bradi2g17710 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
Bradi2g47410 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Brara.C01848.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D00408.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.D02245.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D02299.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Brara.F00715.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Brara.F03055.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.F03154.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Brara.J00114.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Glyma.02G008000 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Glyma.10G137600 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Glyma.19G016700 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Glyma.19G184300 No alias ATP binding cassette subfamily B1 0.02 Orthogroups_2024-Update
LOC_Os02g46680 No alias multidrug resistance protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g47500 No alias MDR-like ABC transporter, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00014276-RA No alias (at3g55320 : 2001.0) P-glycoprotein 20 (PGP20);... 0.02 Orthogroups_2024-Update
Potri.002G019600 No alias P-glycoprotein 13 0.03 Orthogroups_2024-Update
Potri.003G094400 No alias P-glycoprotein 2 0.04 Orthogroups_2024-Update
Potri.014G113500 No alias P-glycoprotein 21 0.02 Orthogroups_2024-Update
Potri.017G081100 No alias ATP binding cassette subfamily B19 0.02 Orthogroups_2024-Update
Potri.017G085000 No alias ABC transporter family protein 0.05 Orthogroups_2024-Update
Potri.018G141400 No alias ABC transporter family protein 0.06 Orthogroups_2024-Update
Pp1s29_108V6 No alias multidrug pheromone mdr abc transporter family 0.03 Orthogroups_2024-Update
Pp1s38_321V6 No alias multidrug pheromone mdr abc transporter family 0.02 Orthogroups_2024-Update
Seita.5G031800.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Seita.5G283000.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Seita.6G060300.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Solyc03g122070 No alias ABC transporter B family-like protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc11g067300 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.02 Orthogroups_2024-Update
evm.model.tig00000025.1 No alias (at2g47000 : 429.0) Multidrug resistance P-glycoprotein... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 728 990
IPR011527 ABC1_TM_dom 71 344
IPR003439 ABC_transporter-like 414 562
IPR003439 ABC_transporter-like 1059 1206
No external refs found!