Pp1s339_2V6

Description : cellular nucleic acid binding

Gene families : OG_42_0005846 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005846_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s339_2V6
Cluster	HCCA clusters: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method	Actions
PSME_00038678-RA	No alias	(at1g75560 : 303.0) zinc knuckle (CCHC-type) family...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0042393	histone binding	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	189	204
IPR001878	Znf_CCHC	152	167
IPR001878	Znf_CCHC	106	121
IPR001878	Znf_CCHC	170	184
IPR001878	Znf_CCHC	69	84
IPR001878	Znf_CCHC	87	102
IPR001878	Znf_CCHC	125	139
IPR001878	Znf_CCHC	244	260

External Links

No external refs found!