Pp1s33_329V6

Description : chromatin remodeling complex subunit

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s33_329V6
Cluster	HCCA clusters: Cluster_245

Target	Alias	Description	ECC score	Gene Family Method
MA_77097g0010	No alias	(at3g06010 : 290.0) Encodes AtCHR12, a SNF2/Brahma-type...	0.02	Orthogroups_2024-Update
Seita.2G320900.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.03	Orthogroups_2024-Update
evm.model.tig00000144.188	No alias	(at5g66750 : 92.4) Protein is similar to SWI2/SNF2...	0.01	Orthogroups_2024-Update
evm.model.tig00000691.35	No alias	(at3g06010 : 234.0) Encodes AtCHR12, a SNF2/Brahma-type...	0.01	Orthogroups_2024-Update
evm.model.tig00020960.24	No alias	(at2g13370 : 202.0) chromatin remodeling 5 (CHR5);...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0004540	ribonuclease activity	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
BP	GO:0006887	exocytosis	IEP	Predicted GO
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predicted GO
BP	GO:0022406	membrane docking	IEP	Predicted GO
BP	GO:0032940	secretion by cell	IEP	Predicted GO
BP	GO:0046903	secretion	IEP	Predicted GO
BP	GO:0048278	vesicle docking	IEP	Predicted GO
BP	GO:0051640	organelle localization	IEP	Predicted GO
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR019787	Znf_PHD-finger	76	119
IPR001650	Helicase_C	640	753
IPR009462	DUF1086	982	1113
IPR023780	Chromo_domain	225	273
IPR023780	Chromo_domain	152	185
IPR000330	SNF2_N	330	616
IPR009463	DUF1087	878	931

External Links

No external refs found!