Description : Methyl-CpG-binding domain-containing family protein (AHRD V3.3 *** A9PAN4_POPTR)
Gene families : OG_42_0003490 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003490_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc11g068740 | |
Cluster | HCCA clusters: Cluster_80 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Kfl00622_0020 | kfl00622_0020_v1.1 | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
CC | GO:0005634 | nucleus | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003684 | damaged DNA binding | IEP | Predicted GO |
MF | GO:0004602 | glutathione peroxidase activity | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Predicted GO |
MF | GO:0008565 | protein transporter activity | IEP | Predicted GO |
BP | GO:0009719 | response to endogenous stimulus | IEP | Predicted GO |
BP | GO:0009725 | response to hormone | IEP | Predicted GO |
BP | GO:0010033 | response to organic substance | IEP | Predicted GO |
BP | GO:0016197 | endosomal transport | IEP | Predicted GO |
MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | Predicted GO |
BP | GO:0016458 | gene silencing | IEP | Predicted GO |
BP | GO:0016482 | cytosolic transport | IEP | Predicted GO |
CC | GO:0030904 | retromer complex | IEP | Predicted GO |
BP | GO:0031047 | gene silencing by RNA | IEP | Predicted GO |
MF | GO:0031072 | heat shock protein binding | IEP | Predicted GO |
BP | GO:0031123 | RNA 3'-end processing | IEP | Predicted GO |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Predicted GO |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Predicted GO |
BP | GO:0042147 | retrograde transport, endosome to Golgi | IEP | Predicted GO |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001739 | Methyl_CpG_DNA-bd | 97 | 192 |
No external refs found! |