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  5. Pp1s347_31V6

Pp1s347_31V6


Description : 50s ribosomal protein


Gene families : OG_42_0005204 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005204_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s347_31V6
Cluster HCCA clusters: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
Bradi4g41070 No alias Ribosomal protein L13 family protein 0.03 Orthogroups_2024-Update
Glyma.19G180500 No alias Ribosomal protein L13 family protein 0.03 Orthogroups_2024-Update
evm.model.tig00020538.65 No alias (p12629|rk13_spiol : 97.8) 50S ribosomal protein L13,... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 22 140
No external refs found!