Solyc11g068940


Description : U-box domain-containing family protein (AHRD V3.3 *** B9IIL0_POPTR)


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g068940
Cluster HCCA clusters: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
A4A49_33780 No alias e3 ubiquitin-protein ligase pub23 0.02 Orthogroups_2024-Update
At3g19380 No alias U-box domain-containing protein 25... 0.03 Orthogroups_2024-Update
Brara.C03388.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.D00589.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Glyma.02G102900 No alias plant U-box 26 0.02 Orthogroups_2024-Update
Glyma.02G196301 No alias plant U-box 24 0.03 Orthogroups_2024-Update
Glyma.03G202600 No alias plant U-box 22 0.02 Orthogroups_2024-Update
Glyma.12G189000 No alias plant U-box 23 0.02 Orthogroups_2024-Update
Glyma.18G042100 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os04g35680 No alias U-box domain containing protein, expressed 0.03 Orthogroups_2024-Update
PSME_00043995-RA No alias (at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00056761-RA No alias (at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS... 0.03 Orthogroups_2024-Update
Potri.014G101100 No alias plant U-box 23 0.02 Orthogroups_2024-Update
Seita.7G104100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G293600.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G169200.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.004G169900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g005160 No alias Avr9/Cf-9 rapidly elicited protein 1 0.04 Orthogroups_2024-Update
Solyc01g007050 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc01g009330 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen11g001970 No alias U-box domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 6 80
No external refs found!