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  5. Solyc11g069160

Solyc11g069160


Description : SUMO E3 ligase SIZ1 (AHRD V3.3 *** A0A0X9AQ43_SOLLC)


Gene families : OG_42_0001670 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001670_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g069160
Cluster HCCA clusters: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Kfl00529_0050 kfl00529_0050_v1.1 (at5g60410 : 335.0) Encodes a plant small... 0.01 Orthogroups_2024-Update
Potri.009G015000 No alias DNA-binding protein with MIZ/SP-RING zinc finger,... 0.03 Orthogroups_2024-Update
Potri.010G219600 No alias DNA-binding protein with MIZ/SP-RING zinc finger,... 0.05 Orthogroups_2024-Update
Seita.3G046500.1 No alias E3 SUMO ubiquitin ligase *(SIZ1) 0.03 Orthogroups_2024-Update
Seita.7G333100.1 No alias E3 SUMO ubiquitin ligase *(SIZ1) 0.03 Orthogroups_2024-Update
Sopen11g027900 No alias MIZ/SP-RING zinc finger 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP Predicted GO
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004532 exoribonuclease activity IEP Predicted GO
MF GO:0004535 poly(A)-specific ribonuclease activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005342 organic acid transmembrane transporter activity IEP Predicted GO
MF GO:0005542 folic acid binding IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0015171 amino acid transmembrane transporter activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
MF GO:0072341 modified amino acid binding IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 145 199
IPR003034 SAP_dom 14 42
IPR004181 Znf_MIZ 398 437
No external refs found!