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  5. Pp1s351_6V6

Pp1s351_6V6


Description : polyubiquitin containing 7 ubiquitin monomers


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s351_6V6
Cluster HCCA clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
163447 No alias ubiquitin 4 0.02 Orthogroups_2024-Update
173723 No alias polyubiquitin 10 0.04 Orthogroups_2024-Update
19615 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
228943 No alias polyubiquitin 10 0.06 Orthogroups_2024-Update
Bradi1g32460 No alias polyubiquitin 10 0.05 Orthogroups_2024-Update
Bradi1g32860 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Bradi3g03957 No alias polyubiquitin 3 0.03 Orthogroups_2024-Update
Bradi3g04730 No alias polyubiquitin 10 0.06 Orthogroups_2024-Update
Cre09.g396400 No alias related to ubiquitin 1 0.03 Orthogroups_2024-Update
Glyma.13G138600 No alias ubiquitin 4 0.04 Orthogroups_2024-Update
HORVU1Hr1G043930.8 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
HORVU4Hr1G061900.2 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Kfl00325_0060 kfl00325_0060_v1.1 (at5g42220 : 100.0) Ubiquitin-like superfamily protein;... 0.02 Orthogroups_2024-Update
MA_1213520g0010 No alias (at5g03240 : 165.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
MA_5869456g0010 No alias (at5g03240 : 181.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
MA_6985771g0010 No alias (at5g03240 : 211.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
MA_9420337g0010 No alias (at5g03240 : 357.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
Potri.005G198700 No alias related to ubiquitin 1 0.02 Orthogroups_2024-Update
Pp1s175_73V6 No alias polyubiquitin 0.02 Orthogroups_2024-Update
Pp1s17_265V6 No alias polyubiquitin containing 7 ubiquitin monomers 0.03 Orthogroups_2024-Update
Pp1s46_189V6 No alias polyubiquitin 0.06 Orthogroups_2024-Update
Seita.1G282500.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Seita.2G110900.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Sobic.002G292500.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.004G049900.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Sobic.004G273300.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.010G040600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc03g082570 No alias ubiquitin-ribosomal fusion protein 0.02 Orthogroups_2024-Update
Solyc08g008590 No alias ubiquitin-ribosomal fusion protein 0.03 Orthogroups_2024-Update
Sopen03g022330 No alias Ubiquitin family 0.02 Orthogroups_2024-Update
Sopen10g002430 No alias Ubiquitin family 0.03 Orthogroups_2024-Update
evm.model.contig_2285.8 No alias (p00074|cyc_ginbi : 153.0) Cytochrome c - Ginkgo biloba... 0.01 Orthogroups_2024-Update
evm.model.tig00000144.76 No alias (at2g35635 : 253.0) encodes a ubiquitin-like protein... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 155 226
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 79 150
No external refs found!