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  5. Pp1s359_44V6

Pp1s359_44V6


Description : transparent testa 1


Gene families : OG_42_0000614 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s359_44V6
Cluster HCCA clusters: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
Bradi2g55540 No alias WIP domain protein 3 0.03 Orthogroups_2024-Update
Brara.I03984.1 No alias C2H2 subclass WIP transcription factor 0.04 Orthogroups_2024-Update
Glyma.02G099100 No alias C2H2-like zinc finger protein 0.05 Orthogroups_2024-Update
Glyma.10G204300 No alias C2H2-like zinc finger protein 0.02 Orthogroups_2024-Update
Glyma.15G273400 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
LOC_Os05g37190 No alias ZOS5-08 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g40960 No alias ZOS6-05 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
PSME_00022766-RA No alias (at1g13290 : 348.0) Encodes a putative zinc finger... 0.03 Orthogroups_2024-Update
Potri.002G098200 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G205000 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
Seita.5G389100.1 No alias C2H2 subclass WIP transcription factor 0.03 Orthogroups_2024-Update
Solyc05g009770 No alias Protein TRANSPARENT TESTA 1-like protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!