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  5. Solyc01g099530

Solyc01g099530


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XQU8_CYNCS)


Gene families : OG_42_0001081 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001081_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g099530
Cluster HCCA clusters: Cluster_164


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0000922 spindle pole IEP Predicted GO
MF GO:0003995 acyl-CoA dehydrogenase activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005815 microtubule organizing center IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007020 microtubule nucleation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 670 700
IPR002885 Pentatricopeptide_repeat 924 945
IPR002885 Pentatricopeptide_repeat 947 994
IPR002885 Pentatricopeptide_repeat 1016 1064
IPR002885 Pentatricopeptide_repeat 496 544
IPR002885 Pentatricopeptide_repeat 842 891
IPR002885 Pentatricopeptide_repeat 703 750
IPR002885 Pentatricopeptide_repeat 567 614
IPR002885 Pentatricopeptide_repeat 773 821
IPR002885 Pentatricopeptide_repeat 1127 1170
IPR002885 Pentatricopeptide_repeat 1261 1310
IPR002885 Pentatricopeptide_repeat 430 479
IPR002885 Pentatricopeptide_repeat 1191 1238
No external refs found!