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  5. Pp1s382_20V6

Pp1s382_20V6


Description : F5I6.2; DNA-binding protein, putative [Arabidopsis thaliana]


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s382_20V6
Cluster HCCA clusters: Cluster_295

Target Alias Description ECC score Gene Family Method Actions
402234 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At3g11350 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.03 Orthogroups_2024-Update
HORVU2Hr1G079060.5 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_110348g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00039610-RA No alias (at5g39710 : 272.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.02 Orthogroups_2024-Update
Seita.5G038700.1 No alias RNA editing factor *(POCO) 0.02 Orthogroups_2024-Update
Sobic.010G252100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc06g005140 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006665 sphingolipid metabolic process IEP Predicted GO
BP GO:0006672 ceramide metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 517 561
IPR002885 Pentatricopeptide_repeat 289 328
IPR002885 Pentatricopeptide_repeat 445 488
IPR002885 Pentatricopeptide_repeat 340 366
IPR002885 Pentatricopeptide_repeat 409 435
No external refs found!