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  5. Pp1s38_196V6

Pp1s38_196V6


Description : 60s acidic ribosomal protein


Gene families : OG_42_0002448 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002448_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Physcomitrella release: Pp1s38_196V6
Cluster HCCA clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
437282 No alias Ribosomal protein L10 family protein 0.01 Orthogroups_2024-Update
Bradi3g14340 No alias Ribosomal protein L10 family protein 0.03 Orthogroups_2024-Update
Brara.C03284.1 No alias component *(uL10) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre12.g520500 No alias Ribosomal protein L10 family protein 0.01 Orthogroups_2024-Update
GRMZM2G066460 No alias Ribosomal protein L10 family protein 0.03 Orthogroups_2024-Update
Glyma.02G255500 No alias Ribosomal protein L10 family protein 0.03 Orthogroups_2024-Update
Kfl00006_0400 kfl00006_0400_v1.1 (p50346|rla0_soybn : 410.0) 60S acidic ribosomal protein... 0.02 Orthogroups_2024-Update
Mp1g07120.1 No alias component RPP0 of LSU proteome component 0.04 Orthogroups_2024-Update
Seita.2G417900.1 No alias component *(uL10) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.007G029400.1 No alias component *(uL10) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
evm.model.contig_3715.5 No alias (o24573|rla0_maize : 264.0) 60S acidic ribosomal protein... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA InterProScan predictions
BP GO:0042254 ribosome biogenesis IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 8 108
No external refs found!