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  5. Solyc01g099670

Solyc01g099670


Description : meloidogyne-induced giant cell protein db212


Gene families : OG_42_0001576 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001576_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g099670
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
37555 No alias RNA binding Plectin/S10 domain-containing protein 0.15 Orthogroups_2024-Update
A4A49_36949 No alias 40s ribosomal protein s10-3 0.12 Orthogroups_2024-Update
A4A49_64300 No alias 40s ribosomal protein s10-3 0.21 Orthogroups_2024-Update
At5g52650 No alias 40S ribosomal protein S10-3... 0.07 Orthogroups_2024-Update
Bradi2g61560 No alias RNA binding Plectin/S10 domain-containing protein 0.2 Orthogroups_2024-Update
Bradi3g43060 No alias RNA binding Plectin/S10 domain-containing protein 0.26 Orthogroups_2024-Update
Brara.A01568.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
Brara.C01425.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.26 Orthogroups_2024-Update
Brara.D01152.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Brara.G01517.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Brara.K00178.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Cre09.g411100 No alias RNA binding Plectin/S10 domain-containing protein 0.15 Orthogroups_2024-Update
GRMZM2G171484 No alias RNA binding Plectin/S10 domain-containing protein 0.19 Orthogroups_2024-Update
Glyma.01G222100 No alias RNA binding Plectin/S10 domain-containing protein 0.19 Orthogroups_2024-Update
Glyma.05G211100 No alias RNA binding Plectin/S10 domain-containing protein 0.05 Orthogroups_2024-Update
Glyma.08G017500 No alias RNA binding Plectin/S10 domain-containing protein 0.05 Orthogroups_2024-Update
Glyma.11G021700 No alias RNA binding Plectin/S10 domain-containing protein 0.15 Orthogroups_2024-Update
HORVU0Hr1G004700.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
HORVU3Hr1G111760.2 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Kfl01159_0030 kfl01159_0030_v1.1 (q9ayp4|rs10_orysa : 213.0) 40S ribosomal protein S10 -... 0.04 Orthogroups_2024-Update
LOC_Os04g35090 No alias 40S ribosomal protein S10, putative, expressed 0.06 Orthogroups_2024-Update
MA_111018g0010 No alias (q9ayp4|rs10_orysa : 184.0) 40S ribosomal protein S10 -... 0.06 Orthogroups_2024-Update
MA_314020g0010 No alias (q9ayp4|rs10_orysa : 182.0) 40S ribosomal protein S10 -... 0.03 Orthogroups_2024-Update
Mp2g00580.1 No alias component RPS10 of SSU proteome 0.05 Orthogroups_2024-Update
PSME_00025508-RA No alias (q9ayp4|rs10_orysa : 181.0) 40S ribosomal protein S10 -... 0.07 Orthogroups_2024-Update
PSME_00031081-RA No alias (q9ayp4|rs10_orysa : 170.0) 40S ribosomal protein S10 -... 0.07 Orthogroups_2024-Update
Potri.004G073500 No alias RNA binding Plectin/S10 domain-containing protein 0.13 Orthogroups_2024-Update
Potri.013G027900 No alias RNA binding Plectin/S10 domain-containing protein 0.09 Orthogroups_2024-Update
Pp1s18_236V6 No alias 40s ribosomal protein s10 0.05 Orthogroups_2024-Update
Pp1s255_28V6 No alias 40s ribosomal protein s10 0.13 Orthogroups_2024-Update
Pp1s281_7V6 No alias 40s ribosomal protein s10 0.16 Orthogroups_2024-Update
Pp1s427_37V6 No alias 40s ribosomal protein s10 0.18 Orthogroups_2024-Update
Pp1s43_46V6 No alias 40s ribosomal protein s10 0.27 Orthogroups_2024-Update
Seita.5G462400.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Seita.7G099000.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Sobic.003G436700.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Sobic.006G081100.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.25 Orthogroups_2024-Update
Sopen01g043180 No alias Plectin/S10 domain 0.28 Orthogroups_2024-Update
Sopen12g032370 No alias Plectin/S10 domain 0.27 Orthogroups_2024-Update
evm.model.contig_636.5 No alias (q9ayp4|rs10_orysa : 95.9) 40S ribosomal protein S10 -... 0.33 Orthogroups_2024-Update
evm.model.tig00001164.5 No alias (original description: no original description) 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005326 S10_plectin_N 3 94
No external refs found!