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  5. Pp1s391_69V6

Pp1s391_69V6


Description : nuclear acid binding


Gene families : OG_42_0000344 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000344_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s391_69V6
Cluster HCCA clusters: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
418663 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Brara.A01678.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.02 Orthogroups_2024-Update
Brara.F00344.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.02 Orthogroups_2024-Update
Brara.H00280.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
Brara.H01532.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
Glyma.02G134400 No alias RNA-binding protein 47B 0.02 Orthogroups_2024-Update
Glyma.07G210800 No alias RNA-binding protein 47B 0.02 Orthogroups_2024-Update
LOC_Os03g37270 No alias RNA recognition motif containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_29443g0010 No alias (at4g27000 : 346.0) ATRBP45C; CONTAINS InterPro... 0.03 Orthogroups_2024-Update
Mp8g07840.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Orthogroups_2024-Update
PSME_00021843-RA No alias (at1g47500 : 296.0) RNA-binding protein 47C' (RBP47C');... 0.02 Orthogroups_2024-Update
PSME_00033385-RA No alias (at1g49600 : 257.0) RNA-binding protein 47A (RBP47A);... 0.02 Orthogroups_2024-Update
Potri.009G105300 No alias RNA-binding protein 47B 0.02 Orthogroups_2024-Update
Sobic.002G228900.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.04 Orthogroups_2024-Update
Solyc10g005260 No alias RNA-binding family protein (AHRD V3.3 *** A0A061FD24_THECC) 0.02 Orthogroups_2024-Update
Sopen02g025110 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 138 208
IPR000504 RRM_dom 259 322
IPR000504 RRM_dom 45 113
No external refs found!