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  5. Pp1s39_364V6

Pp1s39_364V6


Description : 60s ribosomal protein


Gene families : OG_42_0001465 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001465_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s39_364V6
Cluster HCCA clusters: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
113433 No alias Ribosomal protein L34e superfamily protein 0.02 Orthogroups_2024-Update
A4A49_12213 No alias 60s ribosomal protein l34 0.04 Orthogroups_2024-Update
At1g26880 No alias 60S ribosomal protein L34-1... 0.02 Orthogroups_2024-Update
Bradi3g16600 No alias Ribosomal protein L34e superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g16620 No alias Ribosomal protein L34e superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g37060 No alias Ribosomal protein L34e superfamily protein 0.02 Orthogroups_2024-Update
Brara.B01869.1 No alias component *(eL34) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Brara.G02472.1 No alias component *(eL34) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.G02897.1 No alias component *(eL34) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre16.g661050 No alias Ribosomal protein L34e superfamily protein 0.04 Orthogroups_2024-Update
Glyma.01G047000 No alias Ribosomal protein L34e superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G239000 No alias Ribosomal protein L34e superfamily protein 0.05 Orthogroups_2024-Update
HORVU5Hr1G066000.1 No alias component *(eL34) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
HORVU7Hr1G071240.1 No alias component *(eL34) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
LOC_Os09g24690 No alias 60S ribosomal protein L34, putative, expressed 0.02 Orthogroups_2024-Update
MA_175574g0010 No alias (p41098|rl34_tobac : 177.0) 60S ribosomal protein L34 -... 0.03 Orthogroups_2024-Update
Mp4g17040.1 No alias component RPL34 of LSU proteome component 0.04 Orthogroups_2024-Update
PSME_00038465-RA No alias (p41098|rl34_tobac : 177.0) 60S ribosomal protein L34 -... 0.04 Orthogroups_2024-Update
Potri.015G106500 No alias Ribosomal protein L34e superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G082200 No alias Ribosomal protein L34e superfamily protein 0.04 Orthogroups_2024-Update
Pp1s76_47V6 No alias 60s ribosomal protein l34 0.06 Orthogroups_2024-Update
Seita.2G204000.1 No alias component *(eL34) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Seita.6G160000.1 No alias component *(eL34) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Seita.7G124100.1 No alias component *(eL34) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.007G138700.1 No alias component *(eL34) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Solyc05g007560 No alias 60S ribosomal protein L34 (AHRD V3.3 *** RL34_TOBAC) 0.04 Orthogroups_2024-Update
Solyc06g069860 No alias 60S ribosomal protein L34 (AHRD V3.3 *** RL34_TOBAC) 0.03 Orthogroups_2024-Update
Sopen02g032670 No alias Ribosomal protein L34e 0.02 Orthogroups_2024-Update
Sopen05g003450 No alias Ribosomal protein L34e 0.03 Orthogroups_2024-Update
Sopen06g027130 No alias Ribosomal protein L34e 0.02 Orthogroups_2024-Update
evm.model.contig_445.6 No alias (p41098|rl34_tobac : 125.0) 60S ribosomal protein L34 -... 0.03 Orthogroups_2024-Update
evm.model.tig00000632.3 No alias (at1g26880 : 109.0) Ribosomal protein L34e superfamily... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000814 ESCRT II complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010038 response to metal ion IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR008195 Ribosomal_L34Ae 1 96
No external refs found!