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  5. Pp1s3_528V6

Pp1s3_528V6


Description : membrane protein


Gene families : OG_42_0000533 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000533_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s3_528V6
Cluster HCCA clusters: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
A4A49_00166 No alias rhomboid-like protein 3 0.02 Orthogroups_2024-Update
Bradi4g35740 No alias RHOMBOID-like 2 0.02 Orthogroups_2024-Update
Bradi5g18750 No alias RHOMBOID-like protein 6 0.05 Orthogroups_2024-Update
Glyma.04G254500 No alias Rhomboid-related intramembrane serine protease family protein 0.02 Orthogroups_2024-Update
Glyma.13G336700 No alias RHOMBOID-like 1 0.03 Orthogroups_2024-Update
LOC_Os08g43320 No alias OsRhmbd14 - Putative Rhomboid homologue, expressed 0.02 Orthogroups_2024-Update
Mp6g05540.1 No alias protease (RBL) 0.03 Orthogroups_2024-Update
Pp1s98_70V6 No alias membrane protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004357 glutamate-cysteine ligase activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR022764 Peptidase_S54_rhomboid_dom 231 369
No external refs found!