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  5. Pp1s3_98V6

Pp1s3_98V6


No description available


Gene families : OG_42_0001189 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s3_98V6
Cluster HCCA clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
At5g38470 No alias Ubiquitin receptor RAD23d... 0.02 Orthogroups_2024-Update
Bradi1g43980 No alias Rad23 UV excision repair protein family 0.02 Orthogroups_2024-Update
Brara.F01122.1 No alias ubiquitin-proteasome shuttle factor *(RAD23) 0.04 Orthogroups_2024-Update
GRMZM2G061620 No alias Rad23 UV excision repair protein family 0.02 Orthogroups_2024-Update
LOC_Os02g08300 No alias RAD23 DNA repair protein, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s58_148V6 No alias rad23 damaged dna binding 0.02 Orthogroups_2024-Update
Solyc02g063130 No alias Rad23 UV excision repair protein family (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen02g030530 No alias UBA/TS-N domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 76
No external refs found!