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  5. Pp1s41_146V6

Pp1s41_146V6


Description : 40s ribosomal protein


Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s41_146V6
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
A4A49_00336 No alias 40s ribosomal protein s3-3 0.12 Orthogroups_2024-Update
At2g31610 No alias 40S ribosomal protein S3-1... 0.06 Orthogroups_2024-Update
At5g35530 No alias 40S ribosomal protein S3-3... 0.03 Orthogroups_2024-Update
Bradi1g21730 No alias Ribosomal protein S3 family protein 0.02 Orthogroups_2024-Update
Bradi3g16150 No alias Ribosomal protein S3 family protein 0.1 Orthogroups_2024-Update
Brara.C01612.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Brara.C01619.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.26 Orthogroups_2024-Update
Brara.D01897.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Brara.D01899.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Cre02.g102250 No alias Ribosomal protein S3 family protein 0.08 Orthogroups_2024-Update
GRMZM2G074300 No alias Ribosomal protein S3 family protein 0.09 Orthogroups_2024-Update
Glyma.09G156600 No alias Ribosomal protein S3 family protein 0.04 Orthogroups_2024-Update
Glyma.10G133100 No alias Ribosomal protein S3 family protein 0.11 Orthogroups_2024-Update
Glyma.10G133800 No alias Ribosomal protein S3 family protein 0.04 Orthogroups_2024-Update
Glyma.16G207300 No alias Ribosomal protein S3 family protein 0.05 Orthogroups_2024-Update
Glyma.16G207400 No alias Ribosomal protein S3 family protein 0.06 Orthogroups_2024-Update
Glyma.20G083300 No alias Ribosomal protein S3 family protein 0.11 Orthogroups_2024-Update
Kfl00057_0410 kfl00057_0410_v1.1 (at5g35530 : 390.0) Ribosomal protein S3 family protein;... 0.03 Orthogroups_2024-Update
MA_10436283g0010 No alias (at5g35530 : 397.0) Ribosomal protein S3 family protein;... 0.08 Orthogroups_2024-Update
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.18 Orthogroups_2024-Update
PSME_00007401-RA No alias (at5g35530 : 366.0) Ribosomal protein S3 family protein;... 0.07 Orthogroups_2024-Update
PSME_00040312-RA No alias (at5g35530 : 390.0) Ribosomal protein S3 family protein;... 0.07 Orthogroups_2024-Update
Potri.006G222100 No alias Ribosomal protein S3 family protein 0.08 Orthogroups_2024-Update
Potri.018G049100 No alias Ribosomal protein S3 family protein 0.07 Orthogroups_2024-Update
Seita.2G385700.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Seita.6G050300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Sobic.002G371100.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Sobic.007G053300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Solyc07g041310 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.19 Orthogroups_2024-Update
Solyc08g061850 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.14 Orthogroups_2024-Update
Solyc08g061960 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.22 Orthogroups_2024-Update
Sopen07g020630 No alias Ribosomal protein S3, C-terminal domain 0.22 Orthogroups_2024-Update
Sopen08g017410 No alias Ribosomal protein S3, C-terminal domain 0.09 Orthogroups_2024-Update
Sopen08g017480 No alias Ribosomal protein S3, C-terminal domain 0.12 Orthogroups_2024-Update
evm.model.contig_2149.7 No alias (at5g35530 : 302.0) Ribosomal protein S3 family protein;... 0.28 Orthogroups_2024-Update
evm.model.tig00021462.41 No alias (at2g31610 : 358.0) Ribosomal protein S3 family protein;... 0.16 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005740 mitochondrial envelope IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0031967 organelle envelope IEP Predicted GO
CC GO:0031975 envelope IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 106 188
IPR004044 KH_dom_type_2 20 93
No external refs found!